remove molecular mtx

2019-10-31 20:43:09 +11:00
parent bfecea9a4e
commit ef5e5170cf
6 changed files with 12 additions and 243 deletions
@@ -1,82 +0,0 @@
-const fs = require('fs');
-const renderer = require('sdftosvg');
-
-const SVG_OPTS = {
-    backgroundColor: 'none',
-}
-
-function convert(i) {
-    const output = `./../client/assets/molecules/${i}.svg`;
-
-    return new Promise((resolve, reject) => {
-        fs.readFile(`./molecules/mol${i}`, 'utf8', function rfCb(err, sdf) {
-            if (err) return reject(err);
-            // write svg
-            renderer.renderSdfToSvg(sdf, SVG_OPTS, function(err, svg) {
-                if (err) return reject(err);
-                fs.writeFile(output, svg, function written(err) {
-                    if (err) reject(err);
-                    resolve();
-                });
-            });
-        })
-    });
-}
-
-async function loop() {
-    for (var i = 10000; i >= 0; i--) {
-        try {
-            await convert(i);
-            console.log('finished record', i);
-        } catch (e) {
-            console.error('record error', i, e);
-        }
-    }
-}
-
-loop();
-
-// const request = require('request');
-// const fs = require('fs');
-// const renderer = require('sdftosvg');
-
-// const SVG_OPTS = {
-//     backgroundColor: 'none',
-// }
-
-// function fetch(i) {
-//     return new Promise((resolve, reject) => {
-//         const url = `https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/CID/${i}/record/SDF/?record_type=2d&response_type=save&response_basename=Structure2D_CID_2519`;
-//         const output = `./../client/assets/molecules/${i}.svg`;
-
-//         request(url, function cb(err, res, body) {
-//             if (err) reject(err);
-
-//             // write file
-//             fs.writeFile(`./molecules/Structure2D_CID_${i}.sdf`, body, function written(err) {
-//                 if (err) reject(err);
-//             });
-
-//             // write svg
-//             renderer.renderSdfToSvg(body, SVG_OPTS, function(err, svg) {
-//                 if (err) reject(err);
-//                 fs.writeFile(output, svg, function written(err) {
-//                     if (err) reject(err);
-//                     resolve();
-//                 });
-//             });
-//         });
-//     });
-// }
-
-// async function loop() {
-//     for (var i = 10000; i >= 0; i--) {
-//         try {
-//             await fetch(i);
-//             console.log('finished record', i);
-//         } catch (e) {
-//             console.error(e);
-//         }
-//     }
-// }
-
@@ -1,12 +0,0 @@
-const fs = require('fs');
-
-for (let i = 10000; i >= 0; i--) {
-    fs.access(`./../client/assets/molecules/${i}.svg`, (err) => {
-        if (err) {
-            fs.copyFileSync(`./../client/assets/molecules/726.svg`, `./../client/assets/molecules/${i}.svg`);
-            console.log('defaulted', i);
-        }
-        return true;
-    })
-}
-
@@ -0,0 +1,10 @@
+const uuidv4 = require('uuid/v4');
+
+// give everybody the shapes mtx
+exports.up = async knex => {
+    await knex.raw(`
+        DELETE from mtx
+        WHERE variant = 'Molecular';
+    `);
+};
+exports.down = async () => {};
@@ -1,18 +0,0 @@
-const renderer = require('sdftosvg');
-const uuidv4 = require('uuid/v4');
-const fs = require('fs');
-
-function convert(f) {
-    const uuid = uuidv4();
-    const input = `./molecules/${f}`;
-    const output = `./../client/assets/molecules/${uuid}.svg`;
-    fs.readFile(input, 'utf8', (err, sdf) => {
-        renderer.renderSdfToSvg(sdf, {}, function(err, svg) {
-            if (err) console.error(input, err);
-            fs.writeFile(output, svg, 'utf8', err => {
-                if (err) console.error(err);
-            });
-        });
-    });
-}
-